org.biojava.bio.structure.align.util

Class AlignmentTools

Parameters:
alignment - The input function, as a map (see alignmentAsMap(AFPChain))
identity - An identity-like function providing the isomorphism between the codomain of alignment (of type ) and the domain (type ).
Returns:
  • toConciseAlignmentString

    public static <T> java.lang.String toConciseAlignmentString(java.util.Map<T,T> alignment)